Question about Oncotype Test

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AConcernedDaugther
AConcernedDaugther Member Posts: 2

Hi everyone,

First time poster here. First of all, I wanted to thank you all for your discussions on this site. My mom was diagnosed with Stage 1 ER+/PR+, HER2- IDC with DCIS in January, and your posts have helped so much with the steep learning curve and massive amounts of questions that come along with a cancer diagnosis.

I'm hoping someone can help with a question my parents and I have about Oncotype test results. My mom had her tumor (17mm) and DCIS microcalcifications (1.5 mm) sent away to have Oncotype testing run on a sample of each. Prior to this, the original biopsy determined both areas were grade 2, with the tumor having a ki-67 of 17% and the microcalcifications having a ki-67 of 30%.

We have the results back from the Oncotype that was run on the microcalclifications (which we were told had first priority since it was likely to be the more aggressive of the two samples, I'm assuming based on the higher ki-67 rate). The Oncotype score from this was "low" - 15. Great news! Then we were told we had to wait for the second sample (the tumor) to be run.

We just received the call today that the sample from the tumor was too small (???) to be conclusive. The hospital is suggesting that we just go by the Oncotype results for the microcalcifications, since they were more likely to be aggressive anyway. This would mean no chemo, which is actually what we were hoping for because I'm getting married in a few months and we were wanting to avoid the not-so-pleasant side effects that my mom might have experienced from the chemo. So this seems to be good news, but I'm of course worried that we could be passing up an important step by not knowing the Oncotype for the tumor itself.

Has anyone experienced something similar? Does anyone have any advice? Or any insight into how the tumor sample could be too small even though the tumor itself was much larger than the microcalcifications?

(Also, my apologies if I used any incorrect terminology. This is my first time dealing with anything medically major and I'm trying to learn as I go!)

Thanks!

Comments

  • farmerlucy
    farmerlucy Member Posts: 3,985
    edited March 2018

    I’m wondering who called you? I’ve heard that around 3 mm or so is the size they can start testing the sample. Seems like you’d have that on 17mm tumor. I imagine everything will check out, but I’d still do my due diligence by calling the people at Genomic Health, and also calling the pathology department where your mom’s sample is stored. Often pathologist are quite open to speaking with patients. I called my pathology department three years after the fact and the chief of staff volunteered to pull my slides and take another look that same day.

    PS My doctor is among many who does not put a lot of stake in the ki-67 since it can be quite subjective.

  • farmerlucy
    farmerlucy Member Posts: 3,985
    edited March 2018

    I’d certainly ask if they have the sample correctly label. I could see not being able to test the 1.5mm tumor

  • operamom1
    operamom1 Member Posts: 40
    edited March 2018

    There is not a lot of stock put into the Ki67 test since it can vary even between pathologists in the same lab. I, too, suggest making sure that the samples were labeled correctly. It seems suspect that they were able to test the micocalcifications and not the tumor. Was there any spread to the lymph nodes?

    My tumor was 16mm, grade 2, strongly ER/PR positive (90% and 70% respectively), and my Ki67 score was 15%. I had micrometastasis and isolated tumor cells in the lymph nodes. My oncotype score came back at a 13.

    I sympathize with the feelings of uncertainty. I would think, in this kind of a situation, that it might be good to get a second opinion. With a missing oncotype score, I certainly would.

  • AConcernedDaugther
    AConcernedDaugther Member Posts: 2
    edited March 2018

    Thank you so much for your replies. My mom's nurse coordinator is the one who has been keeping us updated, so I'll be taking your advice and calling today to talk to the pathology department and then doing a follow up call with Genomic Health just to be sure. It seems very odd to me that they would have tested the small microcalcifications before the larger tumor itself, but I felt like I was overthinking everything and worrying too much -- I appreciate you both encouraging me to call for a second check!

    Her 3 sentinel nodes were all clear, and she is also strongly ER positive (95%), PR positive (25%), and HER2 negative. (I tried figuring out how to put all this information at the bottom of my posts, but I haven't quite mastered the website yet!)

    I panicked when I first saw the high ki-67 for the microcalcifications and I was relieved to see so many posts on these discussion boards that say doctors don't put much stock in them. I was really looking forward to having the Oncotype results back because they seem to be the most reliable testing available right now, and I felt like it could give me the most "certainty" in a situation that is so uncertain by its nature. None of this is helping with my anxiety, but I suppose it's something you learn to live with?

  • bluepearl
    bluepearl Member Posts: 961
    edited March 2018

    The Ki67 test is part of the oncotypeDX test and is now standard in test results for your particular cancer. It isn't to be ignored. These days, the accuracy is much better with Ki67 whilst a lot of doctors poo-poo it based on results in "the old days"...things have changed and it is still very much relevant considering it is included in the OncotypeDX test.

  • BarredOwl
    BarredOwl Member Posts: 2,433
    edited March 2018

    Bluepearl:

    It is not a matter of "ignoring" it, because the Ki-67 component of the Oncotype test is not separately reported (i.e., currently no one gets information about the Ki-67 mRNA level determined during the Oncotype test).

    You are confusing IHC tests of Ki-67 protein conducted by the pathologist with a non-reported component of the multigene Oncotype Recurrence Score:

    DNA =======> mRNA ======> Protein

    There are different ways to assess expression from the MKI67 gene that encodes the protein Ki-67. You can either measure the level of mRNA or detect the protein product.

    However, the "Ki-67" determinations by the Pathologist versus as part of the Oncotype test use distinct methodologies (IHC vs qRT-PCR) and distinct samples to detect these different biomolecules (protein vs mRNA).

    IHC by the Pathologist: Ki-67 determinations by the Pathologist detect Ki-67 PROTEIN. Labeled antibodies are used to stain whole tumor cells ("immunohistochemistry" or "IHC"). Results are reported as percentage of cells with positive staining for Ki-67 protein. (See next post for more information.)

    Oncotype: The OncotypeDX test for invasive disease assesses expression of 21 different genes (16 cancer-related genes and 5 control genes) using quantitative methods (i.e., quantitative Reverse Transcription/Polymerase Chain Reaction ("qRT-PCR")) to measure mRNA levels isolated from ground up tumor cells. The level of Ki-67 mRNA is used (along with the levels of the other 20 genes) to calculate the multigene Recurrence Score. However, the Ki-67 mRNA level is NOT reported separately in the current Oncotype reports.

    BarredOwl

  • BarredOwl
    BarredOwl Member Posts: 2,433
    edited March 2018

    General Information re Ki-67 Determinations by the Pathologist using IHC:

    Ki-67 is a protein that is a marker of cell proliferation or cell growth (a higher percentage suggests more dividing tumor cells).

    In general, rapidly dividing cells may be more responsive to chemotherapy. The 2015 St. Gallen panel commented on pathologic methods that detect Ki-67 protein:

    >> "There can be little doubt that Ki-67 scores carry robust prognostic information [24], and that high values predict the benefit of addition of cytotoxic chemotherapy [25], but definition of a single useful cut point has proved elusive both because Ki-67 [protein] displays a continuous distribution [26], and as a result of analytic and preanalytic barriers to standardized assessment [27]."

    In other words, despite the results of studies which report some prognostic and predictive value, there are technical issues with determination of Ki-67 percentages by standard IHC methods, including interobserver variability (different results when different people perform the test on the same sample) and lack of reproducibility across laboratories, as explained in detail here:

    >> Polley (2013): "An International Ki67 Reproducibility Study"

    >> http://jnci.oxfordjournals.org/content/105/24/1897.full

    >> (Free PDF available via link)

    Also, different clinical studies use different values as cut points or cut-offs between what is considered "low" or "high" Ki-67.

    This can make it difficult to rely on the results of clinical studies in which Ki-67 was determined in other labs and/or to interpret the clinical significance of a Ki-67 test result based on such studies. Accordingly, some institutions no longer perform Ki-67 testing by IHC (at this time), and clinical consensus guidelines (e.g., from ASCO) do not generally support the broad use of Ki-67 protein (determined by standard IHC) to guide adjuvant chemotherapy decisions.

    To ensure receipt of current, case-specific advice, patients should ask their Medical Oncologist for his/her views on the significance of their Ki-67 protein result and how it should be weighed in connection with their treatment decisions.

    BarredOwl

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